Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

416B

Tissue

Blood

Lineage

cellLine

Description

myeloid progenitor cells, CD34+

Sample

source_name

416B

biomaterial_provider

Stam lab

lab

UW-m

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseDgf

datatype description

DNase Digital Footprinting

cell

416B

cell organism

mouse

cell description

myeloid progenitor cells, CD34+

cell sex

M

age

immortalized

age description

Immortal cells

age

immortalized

age description

Immortal cells

labexpid

DS14099

labversion

Hotspot-v5.2

replicate

1

strain

B6D2F1/J

strain description

Derived from cross between C57BL/6J Female x DBA/2J Male (C57BL/6xDBA/2)F1.

Sequenced DNA Library

library_name

GSM1003815: UW_DnaseDgf_416B_immortalized

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

375635072

Reads aligned (%)

86.5

Duplicates removed (%)

53.6

Number of peaks

131556 (qval < 1E-05)

mm9

Number of total reads

375635072

Reads aligned (%)

86.3

Duplicates removed (%)

53.6

Number of peaks

131649 (qval < 1E-05)