Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Muscle
Cell type
SCMC
NA
NA

Attributes by original data submitter

Sample

source_name
RMS cell line, PAX3-FOXO1, MYCN amp
cell line
SCMC
cell type
rhabdomyosarcoma
antibody
H3K27ac (Active Motif, 39133)
enrichment target
H3K27ac
target function
Active enhancers

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted from ChIP-seq samples prepared following the Active Motif ChIP-IT High Sensitivity kit protocol. DNase DNA purification was performed by column (MiniElute PCR purification kit, Qiagen). Standard Illumina barcodes were introduced during library preparation

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
20584462
Reads aligned (%)
98.5
Duplicates removed (%)
12.5
Number of peaks
44222 (qval < 1E-05)

hg19

Number of total reads
20584462
Reads aligned (%)
98.3
Duplicates removed (%)
12.8
Number of peaks
44131 (qval < 1E-05)

Base call quality data from DBCLS SRA