SRX187515
GSM1005196: BB PolII ChIP-seq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Breast
Cell type
Mammary cells
NA
NA

Attributes by original data submitter

Sample

source_name
Mammary tissues
chip antibody
RNA polymerase II
strain
129SV::FVB/N::C57BL/6
developmental stage
Day of parturition

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
46472324
Reads aligned (%)
97.9
Duplicates removed (%)
28.6
Number of peaks
4436 (qval < 1E-05)

mm9

Number of total reads
46472324
Reads aligned (%)
97.6
Duplicates removed (%)
28.6
Number of peaks
4393 (qval < 1E-05)

Base call quality data from DBCLS SRA