Antigen

Antigen Class

TFs and others

Antigen

Rorc

Cell type

Cell type Class

Blood

Cell type

Th17 Cells

MeSH Description

A subset of helper-effector T-lymphocytes which synthesize and secrete INTERLEUKINS IL-17; IL-17F; and IL-22. These cytokines are involved in host defenses and tissue inflammation in autoimmune diseases.

Sample

source_name

Th17 in vitro

genotype

wt

control

SL1943

factor

RORg

application

ChIP-Seq

cell type

Th17

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer IIx

mm10

Number of total reads

48227089

Reads aligned (%)

87.2

Duplicates removed (%)

15.0

Number of peaks

3916 (qval < 1E-05)

mm9

Number of total reads

48227089

Reads aligned (%)

87.0

Duplicates removed (%)

15.0

Number of peaks

3889 (qval < 1E-05)