SRX187196
GSM1004791: SL9448; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Batf

Cell type

Cell type Class
Blood
Cell type
Th0
NA
NA

Attributes by original data submitter

Sample

source_name
Th0 in vitro
genotype
IRF4 wt
control
SL9444
factor
Batf
time_point
48h
application
ChIP-Seq
cell type
Th0

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
36111269
Reads aligned (%)
96.1
Duplicates removed (%)
21.9
Number of peaks
14192 (qval < 1E-05)

mm9

Number of total reads
36111269
Reads aligned (%)
95.9
Duplicates removed (%)
21.9
Number of peaks
14255 (qval < 1E-05)

Base call quality data from DBCLS SRA