SRX187082
GSM1000409: OSC DHSseq rep1; Drosophila melanogaster; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Cell line
Cell type
OSC
Tissue Source
ovary
Developmental Stage
adult stage

Attributes by original data submitter

Sample

source_name
OSC cells
cell type
OSC cells
sample type
PCR amplified DNaseI digested genomic DNA

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
6300219
Reads aligned (%)
95.8
Duplicates removed (%)
48.0
Number of peaks
7875 (qval < 1E-05)

dm3

Number of total reads
6300219
Reads aligned (%)
96.2
Duplicates removed (%)
39.7
Number of peaks
11892 (qval < 1E-05)

Base call quality data from DBCLS SRA