SRX187080
GSM1000407: S2 DHSseq rep2; Drosophila melanogaster; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
S2 cells
cell type
S2 cells
sample type
PCR amplified DNaseI digested genomic DNA

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
9135726
Reads aligned (%)
96.2
Duplicates removed (%)
36.0
Number of peaks
7323 (qval < 1E-05)

dm3

Number of total reads
9135726
Reads aligned (%)
96.8
Duplicates removed (%)
30.0
Number of peaks
10362 (qval < 1E-05)

Base call quality data from DBCLS SRA