Antigen

Antigen Class

Histone

Antigen

H3K9me3

Cell type

Cell type Class

Blood

Cell type

MEL

Tissue

Blood

Lineage

cellLine

Description

Leukemia (K562 analog)

Sample

source_name

MEL

biomaterial_provider

Weissman lab

lab

Stanford-m

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

MEL

cell organism

mouse

cell description

Leukemia (K562 analog)

cell sex

M

antibody

H3K9me3

antibody antibodydescription

rabbit polyclonal, ChIP grade. Antibody Target: H3K9me3

antibody targetdescription

Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions.

antibody vendorname

Abcam

antibody vendorid

ab8898

treatment

DMSO_2.0pct

treatment description

5 d with 2% Dimethyl sufloxide (DMSO) (Weissman)

control

std

control description

Standard input signal for most experiments.

age

immortalized

age description

Immortal cells

control

std

control description

Standard input signal for most experiments.

controlid

MEL/DMSO_2.0pct/Input/std

strain

Unknown

strain description

Unknown strain origin

Sequenced DNA Library

library_name

GSM1003748: Stanford_ChipSeq_MEL_H3K9me3_DMSO_2.0pct_std

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

mm10

Number of total reads

61634319

Reads aligned (%)

96.8

Duplicates removed (%)

24.0

Number of peaks

692 (qval < 1E-05)

mm9

Number of total reads

61634319

Reads aligned (%)

96.5

Duplicates removed (%)

24.0

Number of peaks

799 (qval < 1E-05)