Antigen

Antigen Class

Histone

Antigen

H3K4me1

Cell type

Cell type Class

Blood

Cell type

MEL

Tissue

Blood

Lineage

cellLine

Description

Leukemia (K562 analog)

Sample

source_name

MEL

biomaterial_provider

Weissman lab

lab

Stanford-m

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

MEL

cell organism

mouse

cell description

Leukemia (K562 analog)

cell sex

M

antibody

H3K4me1

antibody antibodydescription

rabbit polyclonal. Antibody Target: H3K4me1

antibody targetdescription

Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.

antibody vendorname

Abcam

antibody vendorid

ab8895

treatment

None

treatment description

No special treatment or protocol applies

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

age

immortalized

age description

Immortal cells

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

controlid

MEL/None/Input/IgG-rab

labversion

PeakSeq1.0

strain

Unknown

strain description

Unknown strain origin

Sequenced DNA Library

library_name

GSM1003744: Stanford_ChipSeq_MEL_H3K4me1_IgG-rab

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

mm10

Number of total reads

57319101

Reads aligned (%)

97.9

Duplicates removed (%)

13.7

Number of peaks

22257 (qval < 1E-05)

mm9

Number of total reads

57319101

Reads aligned (%)

97.8

Duplicates removed (%)

13.7

Number of peaks

22267 (qval < 1E-05)