SRX186775
GSM1003579: Broad ChipSeq H1-hESC H2A.Z

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.Z

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal antibody raised against a peptide corresponding to the C-terminus of H2AZ. Antibody Target: H2AZ
antibody targetdescription
H2A.Z is a sequence variant of Histone H2A.
antibody vendorname
Millipore
antibody vendorid
07-594
controlid
wgEncodeEH000088
replicate
1,2
softwareversion
ScriptureVPaperR3
cell sex
M
antibody
H2A.Z
antibody antibodydescription
Rabbit polyclonal antibody raised against a peptide corresponding to the C-terminus of H2AZ. Antibody Target: H2AZ
antibody targetdescription
H2A.Z is a sequence variant of Histone H2A.
antibody vendorname
Upstate (Millipore)
antibody vendorid
07-594
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
H1-hESC/Input/std
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM1003579: Broad_ChipSeq_H1-hESC_H2A.Z
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
91569970
Reads aligned (%)
97.3
Duplicates removed (%)
5.5
Number of peaks
20508 (qval < 1E-05)

hg19

Number of total reads
91569970
Reads aligned (%)
96.8
Duplicates removed (%)
6.4
Number of peaks
18501 (qval < 1E-05)

Base call quality data from DBCLS SRA