SRX186722
GSM1003526: Broad ChipSeq NHDF-Ad H3K4me1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Epidermis
Cell type
NHDF
Primary Tissue
Skin
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
NHDF-Ad
biomaterial_provider
Lonza
donor_id
ENCDO759UVX
biomaterial_type
primary cell
cell_type
fibroblast of dermis
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me1
antibody targetdescription
Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname
abcam
antibody vendorid
ab8895
controlid
wgEncodeEH001055
replicate
1,2
softwareversion
ScriptureVPaperR3
cell sex
F
antibody
H3K4me1
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me1
antibody targetdescription
Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname
Abcam
antibody vendorid
ab8895
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
NHDF-Ad/Input/std
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM1003526: Broad_ChipSeq_NHDF-Ad_H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
69163200
Reads aligned (%)
81.8
Duplicates removed (%)
5.3
Number of peaks
69862 (qval < 1E-05)

hg19

Number of total reads
69163200
Reads aligned (%)
81.5
Duplicates removed (%)
5.8
Number of peaks
70827 (qval < 1E-05)

Base call quality data from DBCLS SRA