Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

Monocytes-CD14+

Tissue

monocytes

Lineage

mesoderm

Description

Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), newly promoted to tier 2: not in 2011 analysis

Sample

source_name

Monocytes-CD14+_RO01746

biomaterial_provider

S. Heimfeld Laboratory, FHCRC

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

controlid

wgEncodeEH003130

replicate

1,2

cell

Monocytes-CD14+_RO01746

cell organism

human

cell description

Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), Monocytes-CD14+_RO01746 and Monocytes-CD14+_RO01826 are being used as replicates, newly promoted to tier 2: not in 2011 analysis

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

antibody

Control

treatment

None

treatment description

No special treatment or protocol applies

control

std

control description

Standard input signal for most experiments.

controlid

Monocytes-CD14+_RO01746/None/Input/std

labversion

Illumina_HiSeq_2000

labversion description

Illumina HiSeq 2000

replicate

1

Sequenced DNA Library

library_name

GSM1003475: Broad_ChipSeq_Monocytes-CD14+_RO01746_Control

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

58532584

Reads aligned (%)

90.5

Duplicates removed (%)

7.8

Number of peaks

1273 (qval < 1E-05)

hg19

Number of total reads

58532584

Reads aligned (%)

89.7

Duplicates removed (%)

9.5

Number of peaks

1324 (qval < 1E-05)