Antigen

Antigen Class

TFs and others

Antigen

CHD7

Cell type

Cell type Class

Pluripotent stem cell

Cell type

hESC H1

NA

NA

Sample

source_name

H1-hESC

biomaterial_provider

WiCell Research Institute

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

antibody antibodydescription

Rabbit polyclonal antigen affinity purified, unconjugated, liquid. Antibody Target: CHD7

antibody targetdescription

CHD7 is a member of the CHD (chromodomain-helicase-DNA-binding) family of proteins that interacts with nucleosomes and plays a role in chromatin remodeling to modulate transcription.

antibody vendorname

Bethyl Laboratories

antibody vendorid

A301-223A

controlid

wgEncodeEH000088

replicate

1

softwareversion

ScriptureVPaperR3

cell sex

M

antibody

CHD7_(A301-223A-1)

antibody antibodydescription

rabbit polyclonal antigen affinity purified, unconjugated, liquid

antibody targetdescription

CHD7 is a member of the CHD (chromodomain-helicase-DNA-binding) family of proteins that interacts with nucleosomes and plays a role in chromatin remodeling to modulate transcription.

antibody vendorname

Bethyl

antibody vendorid

A301-223A

treatment

None

treatment description

No special treatment or protocol applies

control

std

control description

Standard input signal for most experiments.

controlid

H1-hESC/None/Input/std

labversion

Illumina_GA2x

labversion description

Illumina Genome Analyzer IIx

softwareversion

ScriptureVPaperR3

Sequenced DNA Library

library_name

GSM1003473: Broad_ChipSeq_H1-hESC_CHD7_(A301-223A-1)

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

44388761

Reads aligned (%)

83.2

Duplicates removed (%)

25.9

Number of peaks

1164 (qval < 1E-05)

hg19

Number of total reads

44388761

Reads aligned (%)

82.6

Duplicates removed (%)

27.1

Number of peaks

1277 (qval < 1E-05)