Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CHD7

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal antigen affinity purified, unconjugated, liquid. Antibody Target: CHD7
antibody targetdescription
CHD7 is a member of the CHD (chromodomain-helicase-DNA-binding) family of proteins that interacts with nucleosomes and plays a role in chromatin remodeling to modulate transcription.
antibody vendorname
Bethyl Laboratories
antibody vendorid
A301-223A
controlid
wgEncodeEH000088
replicate
1
softwareversion
ScriptureVPaperR3
cell sex
M
antibody
CHD7_(A301-223A-1)
antibody antibodydescription
rabbit polyclonal antigen affinity purified, unconjugated, liquid
antibody targetdescription
CHD7 is a member of the CHD (chromodomain-helicase-DNA-binding) family of proteins that interacts with nucleosomes and plays a role in chromatin remodeling to modulate transcription.
antibody vendorname
Bethyl
antibody vendorid
A301-223A
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
H1-hESC/None/Input/std
labversion
Illumina_GA2x
labversion description
Illumina Genome Analyzer IIx
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM1003473: Broad_ChipSeq_H1-hESC_CHD7_(A301-223A-1)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
44388761
Reads aligned (%)
60.3
Duplicates removed (%)
27.1
Number of peaks
1277 (qval < 1E-05)

hg38

Number of total reads
44388761
Reads aligned (%)
61.7
Duplicates removed (%)
25.9
Number of peaks
1164 (qval < 1E-05)

Base call quality data from DBCLS SRA