SRX186664
GSM1003468: Broad ChipSeq Dnd41 H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
DND-41
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
Dnd41
biomaterial_provider
DSMZ
biomaterial_type
immortalized cell line
line
DND-41
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription
Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname
1)abcam; 2)Millipore
antibody vendorid
ab8580; 07-473
controlid
wgEncodeEH002434
replicate
1,2
softwareversion
ScriptureVPaperR3
cell sex
M
antibody
H3K4me3
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription
Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname
Millipore
antibody vendorid
07-473
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
Dnd41/Input/std
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM1003468: Broad_ChipSeq_Dnd41_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
68026539
Reads aligned (%)
91.7
Duplicates removed (%)
22.4
Number of peaks
30896 (qval < 1E-05)

hg19

Number of total reads
68026539
Reads aligned (%)
91.0
Duplicates removed (%)
23.7
Number of peaks
30710 (qval < 1E-05)

Base call quality data from DBCLS SRA