Curated Sample Data


Genome
hg19
Antigen Class
Histone
Antigen
H3K4me2
Cell type Class
Blood
Cell type
DND-41

Cell type information


Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by Original Data Submitter


source_name
Dnd41
biomaterial_provider
DSMZ
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me2
antibody targetdescription
Histone H3 (di methyl K4). Marks promoters and enhancers. Most CpG islands are marked by H3K4me2 in primary cells. May be associated also with poised promoters.
antibody vendorname
abcam
antibody vendorid
ab7766
controlid
wgEncodeEH002434
replicate
1,2
softwareversion
ScriptureVPaperR3
cell sex
M
antibody
H3K4me2
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me2
antibody targetdescription
Histone H3 (di methyl K4). Marks promoters and enhancers. Most CpG islands are marked by H3K4me2 in primary cells. May be associated also with poised promoters.
antibody vendorname
Abcam
antibody vendorid
ab7766
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
Dnd41/Input/std
softwareversion
ScriptureVPaperR3

Metadata from Sequence Read Archive

Library Description


library_name
GSM1003461: Broad_ChipSeq_Dnd41_H3K4me2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer

External Database Query

Logs in read processing pipeline


Number of total reads
36651735
Reads aligned (%)
95.4
Duplicates removed (%)
16.5
Number of peaks
40301 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA