Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Blood
Cell type
DND-41
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
Dnd41
biomaterial_provider
DSMZ
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me2
antibody targetdescription
Histone H3 (di methyl K4). Marks promoters and enhancers. Most CpG islands are marked by H3K4me2 in primary cells. May be associated also with poised promoters.
antibody vendorname
abcam
antibody vendorid
ab7766
controlid
wgEncodeEH002434
replicate
1,2
softwareversion
ScriptureVPaperR3
cell sex
M
antibody
H3K4me2
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me2
antibody targetdescription
Histone H3 (di methyl K4). Marks promoters and enhancers. Most CpG islands are marked by H3K4me2 in primary cells. May be associated also with poised promoters.
antibody vendorname
Abcam
antibody vendorid
ab7766
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
Dnd41/Input/std
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM1003461: Broad_ChipSeq_Dnd41_H3K4me2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
36651735
Reads aligned (%)
95.6
Duplicates removed (%)
16.2
Number of peaks
40319 (qval < 1E-05)

hg19

Number of total reads
36651735
Reads aligned (%)
95.4
Duplicates removed (%)
16.5
Number of peaks
40301 (qval < 1E-05)

Base call quality data from DBCLS SRA