SRX186648
GSM1003452: Broad ChipSeq K562 SETDB1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SETDB1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal. Antibody Target: SETDB1
antibody targetdescription
SET domain, bifurcated 1, the SET domain is a highly conserved, approximately 150-amino acid motif implicated in the modulation of chromatin structure
antibody vendorname
Proteintech
antibody vendorid
11231-1-AP
controlid
wgEncodeEH000052
replicate
1
softwareversion
ScriptureVPaperR3
cell sex
F
antibody
SETDB1
antibody antibodydescription
Rabbit polyclonal. Antibody Target: SETDB1
antibody targetdescription
SET domain, bifurcated 1, the SET domain is a highly conserved, approximately 150-amino acid motif implicated in the modulation of chromatin structure
antibody vendorname
Proteintech Group
antibody vendorid
11231-1-AP
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
K562/None/Input/std
labversion
Illumina_GA2x
labversion description
Illumina Genome Analyzer IIx
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM1003452: Broad_ChipSeq_K562_SETDB1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
44152883
Reads aligned (%)
86.5
Duplicates removed (%)
9.3
Number of peaks
1258 (qval < 1E-05)

hg19

Number of total reads
44152883
Reads aligned (%)
85.7
Duplicates removed (%)
11.1
Number of peaks
1442 (qval < 1E-05)

Base call quality data from DBCLS SRA