Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PHF8

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: PHF8
antibody targetdescription
PHF8 (PHD finger protein 8) is a member of the jumonji family of proteins and contains a jumonji C (JmjC) domain. The JmjC proteins are predicted to be metalloenzymes that play a role a chromatin remodeling and histone demethylation. PHF8 also bears a PHD (plant homeodomain)- type zinc-finger, a domain also found to be involved in chromatin remodeling and transcriptional regulation. Truncating mutations in PHF8 are associated with X-linked mental retardation and cleft lip/cleft palate. PHF8 is also known as ZNF422 and KIAA1111.
antibody vendorname
Bethyl Laboratories
antibody vendorid
A301-772A
controlid
wgEncodeEH000052
replicate
1,2
softwareversion
ScriptureVPaperR3
cell sex
F
antibody
PHF8_(A301-772A)
antibody antibodydescription
Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: PHF8
antibody targetdescription
PHF8 (PHD finger protein 8) is a member of the jumonji family of proteins and contains a jumonji C (JmjC) domain. The JmjC proteins are predicted to be metalloenzymes that play a role a chromatin remodeling and histone demethylation. PHF8 also bears a PHD (plant homeodomain)- type zinc-finger, a domain also found to be involved in chromatin remodeling and transcriptional regulation. Truncating mutations in PHF8 are associated with X-linked mental retardation and cleft lip/cleft palate. PHF8 is also known as ZNF422 and KIAA1111.
antibody vendorname
Bethyl Laboratories
antibody vendorid
A301-772A
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
K562/Input/std
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM1003450: Broad_ChipSeq_K562_PHF8_(A301-772A)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
68104529
Reads aligned (%)
47.3
Duplicates removed (%)
36.9
Number of peaks
29557 (qval < 1E-05)

hg38

Number of total reads
68104529
Reads aligned (%)
48.4
Duplicates removed (%)
35.9
Number of peaks
29582 (qval < 1E-05)

Base call quality data from DBCLS SRA