Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HDAC1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
goat polyclonal IgG, 200 micrograms/ml, epitope mapping at the C-terminus of HDAC1 of human origin. Antibody Target: HDAC1
antibody targetdescription
Histone deacetylase 1 (HDAC1) is a class I histone deacetylase that catalyzes the removal of the acetyl group on lysine residues of the N-terminus of the core histones H2A, H2B, H3, and H4. HDAC1 is a component of multiple deacetylating complexes such as Sin3, NuRD, and CoRest that function to repress gene transcription. Alternate names for HDAC1 include RPD3L1, HD1, GON-10, and DKFZp686H12203.
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-6298
controlid
wgEncodeEH000052
replicate
1,2
softwareversion
ScriptureVPaperR3
cell sex
F
antibody
HDAC1_(SC-6298)
antibody antibodydescription
goat polyclonal IgG, 200 micrograms/ml, epitope mapping at the C-terminus of HDAC1 of human origin. Antibody Target: HDAC1
antibody targetdescription
Histone deacetylase 1 (HDAC1) is a class I histone deacetylase that catalyzes the removal of the acetyl group on lysine residues of the N-terminus of the core histones H2A, H2B, H3, and H4. HDAC1 is a component of multiple deacetylating complexes such as Sin3, NuRD, and CoRest that function to repress gene transcription. Alternate names for HDAC1 include RPD3L1, HD1, GON-10, and DKFZp686H12203.
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-6298
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
K562/Input/std
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM1003448: Broad_ChipSeq_K562_HDAC1_(SC-6298)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
78036209
Reads aligned (%)
52.5
Duplicates removed (%)
31.2
Number of peaks
13795 (qval < 1E-05)

hg38

Number of total reads
78036209
Reads aligned (%)
54.1
Duplicates removed (%)
29.6
Number of peaks
13997 (qval < 1E-05)

Base call quality data from DBCLS SRA