Antigen

Antigen Class

TFs and others

Antigen

ESRRA

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM12878

cell organism

human

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

antibody

ERRA

antibody antibodydescription

Rabbit polyclonal IgG, epitope mapping at the C-terminus of Ets-1 of human origin. Antibody Target: ERRA

antibody targetdescription

epitope corresponding to amino acids 81-160 mapping near the N-terminus of ERRalpha of human origin

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-66882

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

controlid

wgEncodeEH000771

Sequenced DNA Library

library_name

GSM1003605: Stanford_ChipSeq_GM12878_ERRA_IgG-rab

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

59491396

Reads aligned (%)

97.2

Duplicates removed (%)

9.7

Number of peaks

3852 (qval < 1E-05)

hg19

Number of total reads

59491396

Reads aligned (%)

96.3

Duplicates removed (%)

10.9

Number of peaks

2391 (qval < 1E-05)