SRX186073
GSM1001329: Non-WGA-ES-H3K27me3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cell
tissue
Embryonic stem cell
strain
E14
ChIP
H3K27me3 (07-449, Millipore)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
113634308
Reads aligned (%)
87.2
Duplicates removed (%)
20.3
Number of peaks
59480 (qval < 1E-05)

mm9

Number of total reads
113634308
Reads aligned (%)
87.1
Duplicates removed (%)
20.3
Number of peaks
59503 (qval < 1E-05)

Base call quality data from DBCLS SRA