SRX186071
GSM1001327: 100kCells-ES-H3K27me3-WGA; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cell
tissue
Embryonic stem cell
number of cells
100k Cells
strain
E14
ChIP
H3K27me3 (07-449, Millipore)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
176207043
Reads aligned (%)
82.2
Duplicates removed (%)
50.1
Number of peaks
127716 (qval < 1E-05)

mm9

Number of total reads
176207043
Reads aligned (%)
82.1
Duplicates removed (%)
50.2
Number of peaks
127941 (qval < 1E-05)

Base call quality data from DBCLS SRA