SRX186068
GSM1001324: 10kCells-ES-input-WGA; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cell
tissue
Embryonic stem cell
number of cells
10k Cells
strain
E14
ChIP
none, input-DNA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
123942796
Reads aligned (%)
84.4
Duplicates removed (%)
48.8
Number of peaks
74965 (qval < 1E-05)

mm9

Number of total reads
123942796
Reads aligned (%)
84.3
Duplicates removed (%)
48.9
Number of peaks
75102 (qval < 1E-05)

Base call quality data from DBCLS SRA