SRX185839
GSM1000118: LICR ChipSeq CH12 Input immortalized

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CH12
Tissue
Blood
Lineage
cellLine
Description
B-cell lymphoma (GM12878 analog)

Attributes by original data submitter

Sample

source_name
CH12
biomaterial_provider
Weissman lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
line
CH12
cell organism
mouse
cell description
B-cell lymphoma (GM12878 analog)
cell sex
F
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
age
immortalized
biomaterial_type
immortalized cell line
age
immortalized
biomaterial_type
immortalized cell line
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM003164
labversion
01/12/2012 FISH A Lane 5-5
replicate
1
softwareversion
HCS
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM1000118: LICR_ChipSeq_CH12_Input_immortalized
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
80348749
Reads aligned (%)
93.1
Duplicates removed (%)
41.1
Number of peaks
1304 (qval < 1E-05)

mm9

Number of total reads
80348749
Reads aligned (%)
92.9
Duplicates removed (%)
41.1
Number of peaks
1413 (qval < 1E-05)

Base call quality data from DBCLS SRA