SRX185823
GSM1000102: LICR ChipSeq Thymus H3K4me1 adult-8wks

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
Thymus
NA
NA

Attributes by original data submitter

Sample

source_name
Thymus
biomaterial_provider
1)LICR lab; 2)CSHL lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
Thymus
cell organism
mouse
cell description
Thymus
cell sex
M
antibody
H3K4me1
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me1
antibody targetdescription
Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname
Abcam
antibody vendorid
ab8895
age
adult-8wks
age description
Adult 8 weeks
age
adult-8wks
age description
Adult 8 weeks
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM002477
labversion
Pooled & filtered
softwareversion
MACS
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM1000102: LICR_ChipSeq_Thymus_H3K4me1_adult-8wks
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24461596
Reads aligned (%)
95.8
Duplicates removed (%)
14.0
Number of peaks
47022 (qval < 1E-05)

mm9

Number of total reads
24461596
Reads aligned (%)
95.7
Duplicates removed (%)
14.1
Number of peaks
47101 (qval < 1E-05)

Base call quality data from DBCLS SRA