SRX185804
GSM1000083: LICR ChipSeq SmIntestine H3K4me3 adult-8wks

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Digestive tract
Cell type
Small intestine
NA
NA

Attributes by original data submitter

Sample

source_name
SmIntestine
biomaterial_provider
1)LICR lab; 2)CSHL lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
biomaterial_type
tissue
donor_id
ENCDO956IXV
cell organism
mouse
tissue_type
Small Intestine
Sex
male
antibody
H3K4me3
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription
Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname
Millipore
antibody vendorid
07-473
age
adult-8wks
age description
Adult 8 weeks
age
adult-8wks
age description
Adult 8 weeks
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM002486
labversion
Pooled & filtered
softwareversion
MACS
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM1000083: LICR_ChipSeq_SmIntestine_H3K4me3_adult-8wks
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
49301776
Reads aligned (%)
91.3
Duplicates removed (%)
48.1
Number of peaks
36588 (qval < 1E-05)

mm9

Number of total reads
49301776
Reads aligned (%)
91.2
Duplicates removed (%)
48.0
Number of peaks
36595 (qval < 1E-05)

Base call quality data from DBCLS SRA