Antigen

Antigen Class

Histone

Antigen

H3K4me1

Cell type

Cell type Class

Digestive tract

Cell type

Intestines

MeSH Description

The section of the alimentary canal from the STOMACH to the ANAL CANAL. It includes the LARGE INTESTINE and SMALL INTESTINE.

Sample

source_name

SmIntestine

biomaterial_provider

1)LICR lab; 2)CSHL lab

lab

LICR-m

lab description

Ren - Ludwig Institue for Cancer Research

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

SmIntestine

cell organism

mouse

cell description

Small Intestine

cell sex

M

antibody

H3K4me1

antibody antibodydescription

rabbit polyclonal. Antibody Target: H3K4me1

antibody targetdescription

Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.

antibody vendorname

Abcam

antibody vendorid

ab8895

age

adult-8wks

age description

Adult 8 weeks

age

adult-8wks

age description

Adult 8 weeks

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEM002486

labversion

Pooled & filtered

softwareversion

MACS

strain

C57BL/6

strain description

C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name

GSM1000082: LICR_ChipSeq_SmIntestine_H3K4me1_adult-8wks

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

31388313

Reads aligned (%)

88.0

Duplicates removed (%)

15.9

Number of peaks

17961 (qval < 1E-05)

mm9

Number of total reads

31388313

Reads aligned (%)

87.9

Duplicates removed (%)

16.0

Number of peaks

17990 (qval < 1E-05)