SRX185796
GSM1000075: LICR ChipSeq BAT H3K4me3 adult-24wks

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Adipocyte
Cell type
Brown adipocytes
NA
NA

Attributes by original data submitter

Sample

source_name
BAT
biomaterial_provider
Jerrold M. Olefsky Lab, UCSD
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
BAT
cell organism
mouse
cell description
Brown adipocytes tissue
cell sex
M
antibody
H3K4me3
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription
Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname
Millipore
antibody vendorid
07-473
age
adult-24wks
age description
Adult 24 weeks
age
adult-24wks
age description
Adult 24 weeks
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM002656
labversion
Pooled & filtered
softwareversion
MACS
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM1000075: LICR_ChipSeq_BAT_H3K4me3_adult-24wks
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
31186625
Reads aligned (%)
93.3
Duplicates removed (%)
30.5
Number of peaks
34701 (qval < 1E-05)

mm9

Number of total reads
31186625
Reads aligned (%)
93.1
Duplicates removed (%)
30.6
Number of peaks
34718 (qval < 1E-05)

Base call quality data from DBCLS SRA