SRX185794
GSM1000073: LICR ChipSeq MEL H3K4me1 immortalized

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
MEL
Tissue
Blood
Lineage
cellLine
Description
Leukemia (K562 analog)

Attributes by original data submitter

Sample

source_name
MEL
biomaterial_provider
Weissman lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
line
MEL
cell organism
mouse
cell description
Leukemia (K562 analog)
cell sex
M
antibody
H3K4me1
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me1
antibody targetdescription
Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname
Abcam
antibody vendorid
ab8895
age
immortalized
biomaterial_type
immortalized cell line
age
immortalized
biomaterial_type
immortalized cell line
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM002652
labversion
Pooled & filtered
softwareversion
MACS
strain
Unknown
strain description
Unknown strain origin

Sequenced DNA Library

library_name
GSM1000073: LICR_ChipSeq_MEL_H3K4me1_immortalized
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
17989103
Reads aligned (%)
96.5
Duplicates removed (%)
4.7
Number of peaks
23063 (qval < 1E-05)

mm9

Number of total reads
17989103
Reads aligned (%)
96.4
Duplicates removed (%)
4.8
Number of peaks
23061 (qval < 1E-05)

Base call quality data from DBCLS SRA