Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Digestive tract
Cell type
Small intestine
NA
NA

Attributes by original data submitter

Sample

source_name
SmIntestine
biomaterial_provider
1)LICR lab; 2)CSHL lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
biomaterial_type
tissue
donor_id
ENCDO956IXV
cell organism
mouse
tissue_type
Small Intestine
Sex
male
antibody
H3K27me3
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K27me3
antibody targetdescription
Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.
antibody vendorname
Millipore
antibody vendorid
07-449
age
adult-8wks
age description
Adult 8 weeks
age
adult-8wks
age description
Adult 8 weeks
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM002486
labversion
Pooled & filtered
softwareversion
MACS
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM1000064: LICR_ChipSeq_SmIntestine_H3K27me3_adult-8wks
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
56765843
Reads aligned (%)
89.9
Duplicates removed (%)
34.1
Number of peaks
615 (qval < 1E-05)

mm9

Number of total reads
56765843
Reads aligned (%)
89.7
Duplicates removed (%)
34.1
Number of peaks
885 (qval < 1E-05)

Base call quality data from DBCLS SRA