Toggle navigation
ChIP-Atlas
Peak Browser
Target Genes
Colocalization
Enrichment Analysis
Publications
Docs
Advanced
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Clamp
wikigenes
PDBj
CellType: 3rd instar
ATCC
MeSH
RIKEN BRC
SRX1850481
GSM2203001: Female Melanogaster CLAMP ChIPseq Replicate 1; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Clamp
Cell type
Cell type Class
Larvae
Cell type
3rd instar
NA
NA
Attributes by original data submitter
Sample
source_name
Female Melanogaster CLAMP ChIPseq
genotype
wild type
chip antibody
anti-CLAMP (SDix, Cat# 4988.00.02, Lot# G3131-080A02; PMID 22844249)
developmental stage
3rd instar larvae
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard ChIP seq protocol - larvae were homogenized in liquid nitrogen followed by lysis and sonication, chromatin was immunoprecipitated with CLAMP antibody. ChIP-seq libraries were prepared with the illumina TruSeq DNA Prep kit
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
dm3
Number of total reads
10298719
Reads aligned (%)
18.5
Duplicates removed (%)
78.2
Number of peaks
947 (qval < 1E-05)
dm6
Number of total reads
10298719
Reads aligned (%)
16.9
Duplicates removed (%)
80.0
Number of peaks
1157 (qval < 1E-05)
Base call quality data from
DBCLS SRA