SRX183975
GSM994549: InputDNATh0; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
primary CD4+ T cells from spleen and lymph nodes
strain
C57BL/6J
genotype/variation
wild type
cell type
Th0
passages
FACS sorted naive CD4+T cells with plate-bound CD3/28

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
20188280
Reads aligned (%)
98.6
Duplicates removed (%)
9.6
Number of peaks
485 (qval < 1E-05)

mm9

Number of total reads
20188280
Reads aligned (%)
98.4
Duplicates removed (%)
9.7
Number of peaks
573 (qval < 1E-05)

Base call quality data from DBCLS SRA