Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
twi

Cell type

Cell type Class
Embryo
Cell type
2-4h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
Twist ChIP-Seq from 2-4 h wild type embryos
strain
Oregon R (wild type)
tissue
whole-embryo
time point
2-4hr after egg laying (AEL)
chip antibody
Anti Twist

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

dm3

Number of total reads
9170607
Reads aligned (%)
59.0
Duplicates removed (%)
26.5
Number of peaks
4110 (qval < 1E-05)

dm6

Number of total reads
9170607
Reads aligned (%)
55.0
Duplicates removed (%)
31.5
Number of peaks
3257 (qval < 1E-05)

Base call quality data from DBCLS SRA