Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Embryo

Cell type

Neural tube

NA

NA

Sample

age

11.5 day

dev stage

embryonic

donor ID

ENCDO956IXV

tissue

neural tube

sex

pooled male and female

health state

healthy

sample type

tissue

lab

John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

document: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf See ENCODE portal

Sequencing Platform

instrument_model

NextSeq 500

mm10

Number of total reads

192075701

Reads aligned (%)

85.8

Duplicates removed (%)

31.2

Number of peaks

70135 (qval < 1E-05)

mm9

Number of total reads

192075701

Reads aligned (%)

85.7

Duplicates removed (%)

31.5

Number of peaks

70243 (qval < 1E-05)