Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Digestive tract

Cell type

Intestines

MeSH Description

The section of the alimentary canal from the STOMACH to the ANAL CANAL. It includes the LARGE INTESTINE and SMALL INTESTINE.

Sample

tissue

intestine

age

0 day

donor ID

ENCDO469XMJ

dev stage

postnatal

sample type

tissue

sex

pooled male and female

health state

healthy

lab

Len Pennacchio, LBNL

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

document: https://www.encodeproject.org/documents/4f73fbc3-956e-47ae-aa2d-41a7df552c81/@@download/attachment/Ren_ChIP_Library_Preparation_v060614.pdf document: https://www.encodeproject.org/documents/3125496b-c833-4414-bf5f-84dd633eb30d/@@download/attachment/Ren_Tissue_Fixation_and_Sonication_v060614.pdf See ENCODE portal

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

39167496

Reads aligned (%)

97.1

Duplicates removed (%)

14.0

Number of peaks

531 (qval < 1E-05)

mm9

Number of total reads

39167496

Reads aligned (%)

96.9

Duplicates removed (%)

13.9

Number of peaks

593 (qval < 1E-05)