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BigWig
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Peak-call (q < 1E-10)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27me3
wikigenes
PDBj
CellType: Heart
ATCC
MeSH
RIKEN BRC
SRX1834217
GSM2192285: ChIP-seq from heart (ENCLB837DDP); Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27me3
Cell type
Cell type Class
Cardiovascular
Cell type
Heart
MeSH Description
The hollow, muscular organ that maintains the circulation of the blood.
Attributes by original data submitter
Sample
tissue
heart
age
0 day
donor ID
ENCDO469XMJ
dev stage
postnatal
sample type
tissue
sex
pooled male and female
health state
healthy
lab
Len Pennacchio, LBNL
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
document: https://www.encodeproject.org/documents/89795b31-e65a-42ca-9d7b-d75196f6f4b3/@@download/attachment/Ren_Chromatin_Immunoprecipitation.pdf document: https://www.encodeproject.org/documents/4f73fbc3-956e-47ae-aa2d-41a7df552c81/@@download/attachment/Ren_ChIP_Library_Preparation_v060614.pdf document: https://www.encodeproject.org/documents/3125496b-c833-4414-bf5f-84dd633eb30d/@@download/attachment/Ren_Tissue_Fixation_and_Sonication_v060614.pdf See ENCODE portal
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
36444054
Reads aligned (%)
96.9
Duplicates removed (%)
10.2
Number of peaks
338 (qval < 1E-05)
mm9
Number of total reads
36444054
Reads aligned (%)
96.7
Duplicates removed (%)
10.3
Number of peaks
377 (qval < 1E-05)
Base call quality data from
DBCLS SRA