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Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig (Methylation rate)
BigWig (Coverage)
Hypo MR
Partial MR
Hyper MR
For mm9
BigWig (Methylation rate)
BigWig (Coverage)
Hypo MR
Partial MR
Hyper MR
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Bisulfite-Seq
wikigenes
PDBj
CellType: Facial prominence
ATCC
MeSH
RIKEN BRC
SRX1834136
GSM2192204: WGBS from embryonic facial prominence (ENCLB148FSK); Mus musculus; Bisulfite-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq
Cell type
Cell type Class
Embryo
Cell type
Facial prominence
NA
NA
Attributes by original data submitter
Sample
tissue
embryonic facial prominence
age
15.5 day
donor ID
ENCDO956IXV
dev stage
embryonic
sample type
tissue
sex
pooled male and female
health state
healthy
lab
Len Pennacchio, LBNL
Sequenced DNA Library
library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM
library_construction_protocol
document: https://www.encodeproject.org/documents/665c8f16-3724-4ab7-aa29-688f396bcd4f/@@download/attachment/Ecker_Protocol_Summary.png document: https://www.encodeproject.org/documents/862389c9-38b6-4e76-8b84-d82fb9a4c6cf/@@download/attachment/Ecker_Replication_Summary.png document: https://www.encodeproject.org/documents/8f3cbe33-cf8f-4f26-b76b-d14a3b9721bd/@@download/attachment/Ecker_Methyl_Protocol_022315.pdf See ENCODE portal
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
568028357
Reads aligned (%)
86.7
Coverage rate (×)
8.8
Number of hyper MRs
244555 (qval < 1E-05)
mm9
Number of total reads
568028357
Reads aligned (%)
87.6
Coverage rate (×)
8.8
Number of hyper MRs
243903 (qval < 1E-05)
Base call quality data from
DBCLS SRA