SRX1833574
GSM2191800: WGBS from embryonic facial prominence (ENCLB454WAB); Mus musculus; Bisulfite-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Embryo
Cell type
Facial prominence
NA
NA

Attributes by original data submitter

Sample

tissue
embryonic facial prominence
age
14.5 day
donor ID
ENCDO469XMJ
dev stage
embryonic
sample type
tissue
sex
pooled male and female
health state
healthy
lab
Len Pennacchio, LBNL

Sequenced DNA Library

library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM
library_construction_protocol
document: https://www.encodeproject.org/documents/665c8f16-3724-4ab7-aa29-688f396bcd4f/@@download/attachment/Ecker_Protocol_Summary.png document: https://www.encodeproject.org/documents/862389c9-38b6-4e76-8b84-d82fb9a4c6cf/@@download/attachment/Ecker_Replication_Summary.png See ENCODE portal

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
638021957
Reads aligned (%)
87.4
Coverage rate (×)
8.1
Number of hyper MRs
249822 (qval < 1E-05)

mm9

Number of total reads
638021957
Reads aligned (%)
88.3
Coverage rate (×)
8.1
Number of hyper MRs
249275 (qval < 1E-05)

Base call quality data from DBCLS SRA