SRX1833403
GSM2191630: ChIP-seq from heart (ENCLB478BAU); Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Cardiovascular
Cell type
Heart
MeSH Description
The hollow, muscular organ that maintains the circulation of the blood.

Attributes by original data submitter

Sample

tissue
heart
age
0 day
donor ID
ENCDO469XMJ
dev stage
postnatal
sample type
tissue
sex
pooled male and female
health state
healthy
lab
Len Pennacchio, LBNL

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
document: https://www.encodeproject.org/documents/89795b31-e65a-42ca-9d7b-d75196f6f4b3/@@download/attachment/Ren_Chromatin_Immunoprecipitation.pdf document: https://www.encodeproject.org/documents/4f73fbc3-956e-47ae-aa2d-41a7df552c81/@@download/attachment/Ren_ChIP_Library_Preparation_v060614.pdf document: https://www.encodeproject.org/documents/3125496b-c833-4414-bf5f-84dd633eb30d/@@download/attachment/Ren_Tissue_Fixation_and_Sonication_v060614.pdf See ENCODE portal

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
30388302
Reads aligned (%)
96.0
Duplicates removed (%)
23.8
Number of peaks
29635 (qval < 1E-05)

mm9

Number of total reads
30388302
Reads aligned (%)
95.8
Duplicates removed (%)
23.9
Number of peaks
29675 (qval < 1E-05)

Base call quality data from DBCLS SRA