SRX183339
GSM997589: Cre-infected cKO MEFs H3K9me3 ChIPseq biological replicate 3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
conditional KO Rb MEF
cell type
MEFs
strain
mixed B6; 129 background
gfp/cre-infected
Cre
4f
no 4F
chip antibody
H3K9me3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
40285696
Reads aligned (%)
59.2
Duplicates removed (%)
33.3
Number of peaks
496 (qval < 1E-05)

mm9

Number of total reads
40285696
Reads aligned (%)
58.8
Duplicates removed (%)
33.2
Number of peaks
564 (qval < 1E-05)

Base call quality data from DBCLS SRA