SRX1833380
GSM2191607: ChIP-seq from kidney (ENCLB261BTS); Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Embryo
Cell type
Embryonic kidney
NA
NA

Attributes by original data submitter

Sample

tissue
kidney
age
16.5 day
donor ID
ENCDO956IXV
dev stage
embryonic
sample type
tissue
sex
pooled male and female
health state
healthy
lab
Len Pennacchio, LBNL

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
document: https://www.encodeproject.org/documents/89795b31-e65a-42ca-9d7b-d75196f6f4b3/@@download/attachment/Ren_Chromatin_Immunoprecipitation.pdf document: https://www.encodeproject.org/documents/4f73fbc3-956e-47ae-aa2d-41a7df552c81/@@download/attachment/Ren_ChIP_Library_Preparation_v060614.pdf document: https://www.encodeproject.org/documents/3125496b-c833-4414-bf5f-84dd633eb30d/@@download/attachment/Ren_Tissue_Fixation_and_Sonication_v060614.pdf See ENCODE portal

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
37373579
Reads aligned (%)
93.8
Duplicates removed (%)
12.5
Number of peaks
20878 (qval < 1E-05)

mm9

Number of total reads
37373579
Reads aligned (%)
93.7
Duplicates removed (%)
12.6
Number of peaks
20891 (qval < 1E-05)

Base call quality data from DBCLS SRA