Antigen

Antigen Class

Histone

Antigen

H3K9me3

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

tissue

liver

age

0 day

donor ID

ENCDO469XMJ

dev stage

postnatal

sample type

tissue

sex

pooled male and female

health state

healthy

lab

Len Pennacchio, LBNL

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

document: https://www.encodeproject.org/documents/89795b31-e65a-42ca-9d7b-d75196f6f4b3/@@download/attachment/Ren_Chromatin_Immunoprecipitation.pdf document: https://www.encodeproject.org/documents/4f73fbc3-956e-47ae-aa2d-41a7df552c81/@@download/attachment/Ren_ChIP_Library_Preparation_v060614.pdf document: https://www.encodeproject.org/documents/3125496b-c833-4414-bf5f-84dd633eb30d/@@download/attachment/Ren_Tissue_Fixation_and_Sonication_v060614.pdf See ENCODE portal

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

84027795

Reads aligned (%)

90.6

Duplicates removed (%)

36.8

Number of peaks

1030 (qval < 1E-05)

mm9

Number of total reads

84027795

Reads aligned (%)

89.9

Duplicates removed (%)

36.4

Number of peaks

1277 (qval < 1E-05)