Antigen

Antigen Class

Bisulfite-Seq

Antigen

Bisulfite-Seq

Cell type

Cell type Class

Embryo

Cell type

Embryonic lung

NA

NA

Sample

tissue

lung

age

14.5 day

donor ID

ENCDO469XMJ

dev stage

embryonic

sample type

tissue

sex

pooled male and female

health state

healthy

lab

Len Pennacchio, LBNL

Sequenced DNA Library

library_strategy

Bisulfite-Seq

library_source

GENOMIC

library_selection

RANDOM

library_construction_protocol

document: https://www.encodeproject.org/documents/665c8f16-3724-4ab7-aa29-688f396bcd4f/@@download/attachment/Ecker_Protocol_Summary.png document: https://www.encodeproject.org/documents/862389c9-38b6-4e76-8b84-d82fb9a4c6cf/@@download/attachment/Ecker_Replication_Summary.png See ENCODE portal

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

591210296

Reads aligned (%)

90.1

Coverage rate (×)

7.7

Number of hyper MRs

258248 (qval < 1E-05)

mm9

Number of total reads

591210296

Reads aligned (%)

91.1

Coverage rate (×)

7.7

Number of hyper MRs

257629 (qval < 1E-05)