Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H4R3me2

Cell type

Cell type Class
Blood
Cell type
BCBL1
NA
NA

Attributes by original data submitter

Sample

source_name
TRExBCBL1-RTA cells
cell type
KSHV infected Body Cavity Based Lymphoma Cells
antibody
H4R3me2s
antibody manufacturer
Active Motif

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
lytic cells were cross-linked using formaldehyde to fix the protein-DNA for ChIP assay Chromatins were immunoprecipitated using anti-H4R3symmtreic antibody by following standard ChIP protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
4641508
Reads aligned (%)
80.2
Duplicates removed (%)
0.9
Number of peaks
58 (qval < 1E-05)

hg19

Number of total reads
4641508
Reads aligned (%)
79.8
Duplicates removed (%)
1.4
Number of peaks
86 (qval < 1E-05)

Base call quality data from DBCLS SRA