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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: PALB2
wikigenes
PDBj
CellType: MCF 10A
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX182683
GSM997541: PALB2; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
PALB2
Cell type
Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease
Attributes by original data submitter
Sample
source_name
MCF10A_PALB2_ChIP-seq
cell line
MCF10A
cell type
breast epithelial cells
sample type
ChIP-seq
molecule subtype
immunoprecipitated DNA
chip-seq antibody
anti-PALB2 rabbit polyclonal
chip-seq antibody vendor
Bethyl
Sequenced DNA Library
library_name
GSM997541: PALB2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
17615498
Reads aligned (%)
88.2
Duplicates removed (%)
66.3
Number of peaks
384 (qval < 1E-05)
hg19
Number of total reads
17615498
Reads aligned (%)
87.4
Duplicates removed (%)
68.6
Number of peaks
380 (qval < 1E-05)
Base call quality data from
DBCLS SRA