Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Pancreas
Cell type
L3.6
NA
NA

Attributes by original data submitter

Sample

source_name
L3.6_BRD4
cell type
L3.6 pancreatic cancer cells
chip antibody
N-terminal BRD4 antibody, Wu et al., 2006

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
14862188
Reads aligned (%)
92.9
Duplicates removed (%)
73.9
Number of peaks
6018 (qval < 1E-05)

hg19

Number of total reads
14862188
Reads aligned (%)
92.2
Duplicates removed (%)
75.3
Number of peaks
6140 (qval < 1E-05)

Base call quality data from DBCLS SRA