SRX1817734
GSM2186407: K9m3 TS rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
trophoblast stem cell
strain
TS6.5, B5/EGFP, Tanaka et al. 1998
illumina platform
NextSeq500
read type
PE150

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
H3K9me3 native ChIP as described in Karimi et al. 2012 Truseq adapters, https://ethanomics.wordpress.com/chip-seq-library-construction-using-the-illumina-TruSeq-adapters

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21630803
Reads aligned (%)
70.4
Duplicates removed (%)
30.9
Number of peaks
107 (qval < 1E-05)

mm9

Number of total reads
21630803
Reads aligned (%)
70.2
Duplicates removed (%)
31.3
Number of peaks
91 (qval < 1E-05)

Base call quality data from DBCLS SRA