Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

G1E-ER4+E2

Tissue

Blood

Lineage

cellLine

Description

Gata1 restored erythroid cells, differentiation induced by estradiol (E2)

Sample

source_name

G1E-ER4

biomaterial_provider

Mitch Weiss lab

lab

PSU-m

lab description

Hardison - Penn State University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

G1E-ER4

cell organism

mouse

cell description

Gata1 restored erythroid cells, differentiation induced by estradiol (E2)

cell sex

M

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

treatment

None

treatment description

No special treatment or protocol applies

labexpid

Timecourse

age

E0

age description

Embryonic day 0 (stem cell)

control

Input

control description

Control signal which may be subtracted from experimental raw signal before peaks are called.

controlid

wgEncodeEM003202

labexpid

Timecourse

replicate

1

strain

129

strain description

Strain 129, has widely available embryonic stem cells

Sequenced DNA Library

library_name

GSM995441: PSU_ChipSeq_G1E-ER4_Input_Timecourse

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

30130843

Reads aligned (%)

93.1

Duplicates removed (%)

5.9

Number of peaks

556 (qval < 1E-05)

mm9

Number of total reads

30130843

Reads aligned (%)

93.0

Duplicates removed (%)

6.0

Number of peaks

607 (qval < 1E-05)