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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me3
wikigenes
PDBj
CellType: SU-DHL-6
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX181456
GSM994744: SUDHL6 H3K4me3; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me3
Cell type
Cell type Class
Blood
Cell type
SU-DHL-6
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma
Attributes by original data submitter
Sample
source_name
Diffuse large B cell lymphoma
cell line
SUDHL6
chip antibody manufacturer
Cell Signaling
chip antibody
H3K4me3
Sequenced DNA Library
library_name
GSM994744: SUDHL6 H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
37110132
Reads aligned (%)
91.7
Duplicates removed (%)
50.4
Number of peaks
4666 (qval < 1E-05)
hg19
Number of total reads
37110132
Reads aligned (%)
90.9
Duplicates removed (%)
51.8
Number of peaks
4571 (qval < 1E-05)
Base call quality data from
DBCLS SRA