SRX181455
GSM994743: HT H3K4me3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
HT
Primary Tissue
Blood
Site of Extraction
Ascites
Tissue Diagnosis
Lymphoma Diffuse Mixed

Attributes by original data submitter

Sample

source_name
Diffuse large B cell lymphoma
cell line
HT
chip antibody manufacturer
Cell Signaling
chip antibody
H3K4me3

Sequenced DNA Library

library_name
GSM994743: HT H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
36339223
Reads aligned (%)
91.2
Duplicates removed (%)
44.1
Number of peaks
3258 (qval < 1E-05)

hg19

Number of total reads
36339223
Reads aligned (%)
90.4
Duplicates removed (%)
45.6
Number of peaks
3189 (qval < 1E-05)

Base call quality data from DBCLS SRA