SRX1813544
GSM2183739: iPS rep3 PolII; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
iPS_PolII
chip antibody
Rpb1 CTD (Cell Signaling 2629S Lot: 3)
cell line
iPS cells
protocol
iPS R4
passage
18

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
See ChIP-Endo Protocol.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11213116
Reads aligned (%)
71.2
Duplicates removed (%)
3.4
Number of peaks
166 (qval < 1E-05)

hg19

Number of total reads
11213116
Reads aligned (%)
70.9
Duplicates removed (%)
3.4
Number of peaks
141 (qval < 1E-05)

Base call quality data from DBCLS SRA